If you have a large SQL file that you want to run you and you can connect directly to your database from your desktop you can just open the file in the SQL editor and execute it. However the SQL Editor does have an issue if the file you are trying to run is very big ( 20 MB should be fine though but there might be some lag opening the file). If that is the case try just connecting using the MySQL command line tools and piping in the SQL file. The command line would look something like: mysql -u {user} -p {database} {your sql file} You can find the MySQL command line tools in the MySQL server installation. Not sure how else you would get it for Windows.
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